NOTE: just did a dimensional check and realized I had a problem. Below I've fixed it.
You should check my math as I'm doing this on the fly, but the basic idea is probably something like this:
Suppose pits are, on average, hemispheres (as good an assumption as any given no other knowledge).
d = density of pits (ave # per unit area)
r = ave radius of a pit
Surface area of sphere = 4 * pi * r^2
Surface area of hemisphere = 2 * pi * r^2
Area of circle = pi * r^2
For each pit, you are replacing the surface area of a circle with the surface area of a hemisphere (by our assumption).
The difference is:
2*pi*r^2 - pi*r^2 = pi*r^2
If the total (non-pitted) surface area is S,
then one estimate for the difference between them might be given by ...
pi * S * d * r^2
Make sure S, d, and r^2 are all in the same units.
(This is how I noticed my initial mistake.)
NOTE: you should still check the math.