The paper was written by researchers at Spain's national center for research into human evolution in Burgos and appears in the journal of the Proceedings of the National Academy of Sciences. The research deals mainly with pre-modern humans but it does indicate that human evolution for all the time before any single "out of Africa" modern human migration was by gene flow. My guess is that nothing changed when modern humans emerged. The same process just kept right on a-happening.
http://news.yahoo.com/s/afp/20070807/sc_afp/usscienceoriginsFrom the article:
"The findings challenge the prevailing "Out of Africa" theory, which holds that anatomically modern man first arose from one point in Africa and fanned out to conquer the globe, and bolsters the notion that Homo sapiens evolved from different populations in different parts of the globe."